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Introduction

A mutant in its basic definition is a genetic variant that causes a phenotype that differs from what is usual for that species. Often, an approach that is used for identifying mutants is called forward genetics. In forward genetics, a gene function is identified by working from a mutant phenotype. However, in pot-genomic era studies, we often employ what is called “reverse genetics”. In reverse genetics, we start from a plant which is homozygous for a mutant allele of an unknown gene and then analyze that gene. We used our B. distachyon plants which were homozygous for a mutation in our unknown gene, analyzing the phenotype of our plant, to help hypothesize a function for the unknown gene.

Plants have several different types of circadian rhythm. The first is that plants orient themselves towards the sun during the day to maximize photosynthesis. Plants also undergo another circadian rhythmic nastic movement called nyctinasty. Nyctinasty is a response in higher plants to the onset of darkness. An example of nyctinasty in plants is when the leaves and petals of plants close at night. The action is brought about by darkness and is an evolutionary reaction that preserves water and sugar levels in the plant when conditions are not optimal for photosynthesis. 

Circadian rhythm is a biological process that displays a pattern of biological actions over the course of roughly 24 hours. All types of organisms display a circadian rhythm, including plants and animals. In animals, circadian rhythm is the animals sleep schedule. When it gets dark out the animal will get sleepy, and when the sun comes up the animal will feel energized. In plants, circadian rhythm is the plant’s orientation. Plants will reposition themselves at different times of the day in order to maximize photosynthetic output. 

A LOV domain stands for a light-oxygen-voltage-sensing domain. This LOV domain is a protein sensor used by a large variety of higher plants to control phototropism, chloroplast relocation, and stomatal opening. The LOV domain has been found to do this by controlling gene expression through DNA binding. The LOV domain is also involved in redox-dependent regulations.

Plants are photosynthetic and require light to survive. When plants are left in the shade they don’t die immediately though. When left in the shade, plants become etiolated. Etiolation results in stem elongation, paleness, and a lack of photosynthetic maturation. Etiolation occurs usually in plants below a canopy. Far red light is what triggers etiolation, which penetrates through the shade of the canopy. In order to reverse etiolation, all that would be necessary would be for the plant to be exposed to red light again, because red light is what activates de-etiolation.

Plants are photosynthetic and require light to survive. When plants are left in the shade they don’t die immediately though. When left in the shade, plants become etiolated. Etiolation results in stem elongation, paleness, and a lack of photosynthetic maturation. Etiolation occurs usually in plants below a canopy. Far red light is what triggers etiolation, which penetrates through the shade of the canopy. In order to reverse etiolation, all that would be necessary would be for the plant to be exposed to red light again, because red light is what activates de-etiolation.

Plants use a technique called photomorphogenesis. Photomorphogenesis is the development of form and structure in a plant that is affected by light. This is a response to light that is independent of other light-based responses in the plant, such as photosynthesis. Some examples of photomorphogenesis in plants are their day/night cycles or hourly orientation towards the sun. Changing the day length will change how the flower or leaf orients itself at certain times in the day.

There are several types of photoreceptors in plants. Some of these photoreceptors are phytochromes, cytochromes, and phototropins. Phytochromes are a class of photoreceptor that plants use to detect light and mediate a photosynthetic response. Cytochromes are photoreceptors that function as electron transfer agents in metabolic pathways. Cytochromes are compounds consisting of a heme bonded to a protein. Finally, phototropins are photoreceptors that mediate phototropic responses in higher plants. They allow plants to alter their response and growth to light.

Temperature is the intensity of thermal energy within a substance or object and can vary
between being hot or cold. When it is too cold cell proteins may be destroyed as ice forms, or as
water is lost, heat coagulates proteins and changes the cell structure and function. Metabolic
activities of microbes, plants and animals are regulated by enzymes and those enzymes are
influenced by temperature, especially increased temperature, up to a certain limit. Increased
temperature brings about increased enzymatic activity, resulting in an increased rate of
metabolism. Temperature can have many effects on an organism, it can affect their cell structure,
metabolism, growth and even their behavior.

Religious forms of knowledge are more of the exaggerated ways in which people give explanations to what goes on in the world. This is why different religions started in different parts of the world, but seem to have somewhat similar beliefs in a way. This reminds of of convergent evolution, but in the form of religion. Despite living and growing up in different parts of the world, we still manage to come up with a certain religion in which we believe in. 

Scientific forms of knowledge are more of the evidential ways in which people give explanations to what goes on in the world. Science is for the most part, able to be proven true or not true. This is why I think scientists lean more towards to scientific explanations instead of religion explanations. Regardless there are still some knowledgeable people such as that MD in the video who uses the ways of religion to live his life. There are also popes like the one in the video who try to explain religion by using science. 

In the end I believe it's just what is said in Chapter 3 Evolution vs. Creationism is true. We humans always try to find explanations for everything that go on in this world. We believe whatever we hear or see for the most part. We can be skeptical but sometimes the need to want to know the reason for something outweighs the skepticism.