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Draft 3/Week 9

Submitted by scasimir on Thu, 03/21/2019 - 23:51

Baby Indigo cannot navigate without seeing the stars when it's their first time flying. They need to see the sky on a regular basis during their first month in order to see and choose their migratory direction. The axis of rotation of the night sky establishes their north-south frame of reference. They learn the constellations associated with the axis. If the axis is switched, baby Indigo buntings follow the brightest star to navigate even if this migratory paths take longer to get to their final destination.

Pancreatic Cancer Stem Cells

Submitted by sditelberg on Thu, 03/21/2019 - 23:35

The antigen CD44 is expressed on the surface of pancreatic cancer stem cells (PCSCs) and modulates the cytoskeleton via the linker protein ezrin, which is more active and present in higher levels in these stem cells than in differentiated tumor cells (Penchev et al. 2019). Elimination of ezrin as well as targeting via a small molecule inhibitor has been found to decrease self-renewal, clonogenic growth, and migration in vitro as well as tumor initiation in vivo (Penchev et al. 2019). Natural compounds and phytochemicals such as curcumin, resveratrol, tea polyphenol EGCG (epigallocatechin-3-gallate), crocetinic acid, sulforaphane, genistein, indole-3-carbinol, vitamin E δ-tocotrienol, plumbagin, quercetin, triptolide, licofelene, and quinomycin have also been shown to inhibit PCSCs as well as their signaling pathways (Subramaniam et al. 2018). These treatments to inhibit self-renewal may be useful in phase 1 of our treatment plan, but a method to induce differentiation back into pancreatic cancer cells has yet to be researched. The premetastatic niche may also be able to be targeted in phase 1 of treatment, but effective targets have yet to be researched as well.

Response to Figures

Submitted by ncarbone on Thu, 03/21/2019 - 23:14

Based upon figure 1 the effect of Ulva on Gigartina is a positive effect following the facilitation model. A facilitation model means that early colonists modify the environment so that it is more suitable for late successors and less suitable for other early successors. The Gigartina is a late species and when the Ulva is present then the number of Gigartina increases over time. When Ulva is removed the Gigartina levels are consistently low throughout both years. The pattern of mortality for fir and aspen changes when the aspen plots are thinned. When the aspen plots are thinned the fir mortality increases but the aspen mortality stays the same. This could be due to the fact that the fir are more susceptible to fire in the absence of aspen. The likely mechanism controlling these interactions is a tolerance model. In a tolerance model the earlier successors modify the environment so that is has a small effect on the later successional species. The later successor then takes over the colony and can eliminate the earlier species. In figure 2 Aspen is the earlier successor but over time the fir can still increase in density despite the presence of the aspen. However, as the Fir continues to grow the density of the aspen starts to decrease.  

Book Section IV

Submitted by sfairfield on Thu, 03/21/2019 - 22:47

Pearce’s overarching theme this section of the pitfalls of pumping from aquifers, whether it be in the American midwest, North Africa, of Asia, was illuminating and troubling, as he highlighted again and again in each of his examples how quickly and often wastefully groundwater resources are depleted, and how few alternatives there are once those groundwater reserves are gone. The part of this section I found most disturbing was the mass poisoning of the Bangladeshi people due to arsenic contamination of the water wells across much of their country. The statistic Pearce offered, that more than 1 out of 20 deaths in the country were a result of arsenic poisoning, was staggering. I was surprised to learn that these arsenic deposits were naturally occuring, and common in delta regions with new inland sediments and alkaline inland drainage basins, as my first guess would have been that the arsenic levels were related to some form of man-made pollution.

 

German Shephard

Submitted by sharrath on Thu, 03/21/2019 - 22:03

If there is only enough vaccine to save one pregnant mother and her puppies, the German Shephard dog breed should be saved. These dogs are confident, courageous, smart and are highly ranked due to their loyalty. These large muscular dogs are a preferred breed for many types of work including disability assistance and many police distinguished roles (Greenberg, Aurora). These dogs are dog kind’s finest all-purpose worker as their trainability exceeds that of many other breeds of dogs. German Shepherds require lots of movement and exercise, but the breed is very easy to maintain “usually requiring just a quick brushing every few days or so” making them simple to groom and manage (Greenberg, Aurora). Every family deserves to experience life with a loving and protecting dog. What was once a mutual service contract between two very distinct species became something much more like love. Being able to save this breed, will allow people to become more joyful and live the life they enjoy with this outstanding breed of dogs. 

Jaguar conclusion

Submitted by aprisby on Thu, 03/21/2019 - 21:07

The combination of our target corridors and habitats, total to a cost of 5 million dollars which is directly in line with our budget. All of our financial resources will be used to their fullest potential as the impact of the protected habitats and corridors will allow for the continued gene flow and safe passage from one jaguar population to another. There will be $2,650,000 allotted to the conservation of certain corridors while the remaining $2,350,000 will be used to protect valuable populations throughout South and Central America.Affected by habitat loss, fragmentation, human wildlife conflicts and illegal wildlife trade, jaguars are a species that face the risk of extinction as a direct result of human actions. Although countless populations continue to decline through poaching, ecosystem degeneration, and human intolerance, there is hope. Through our efforts in preserving jaguar habitat patches and corridors, jaguars are able to disperse, bringing new genetic material to new areas to increase genetic variability which helps to preserve populations. Choosing to conserve habitat patches of decreasing species allows them the ability and space to grow, while conserving areas of stable populations provides healthy populations. Preserving the corridors which connect these two permits jaguar populations to expand their gene pool which in turn promotes the best traits to be selected which will allow the species to better adapt and survive.

 

Writing for Persuasion pt 2

Submitted by cslavin on Thu, 03/21/2019 - 20:39

If there was a new retrovrius killing domestic dogs, but we could save one pregnant mother, the breed of dog we should save is the Poodle. This becuase Poodles are both family friendly and highly intelegent - the most intelligent of all dog breeds. These dogs not only make great family pets, but they can be trained for special and specific purposes. 

Poodles make great pets because they are loyal, alert, and trainable. Poodles are hypoallergenic, which would allow people with allergies to dog hair to also be able to have a dog as a pet. They are also highly intelligent which means they could be trained easily and could be used as service dogs and support animals. They were originally bred to be hunters, which could be useful if there were ever times of food shortages.  The dogs are good swimmers and known to have soft mouths which allowed them to gently recover hunters prey. All in all, because Poodles are good family pets and could be useful to society, they are the breed of dog that should be saved if there was ever a retrovirus. 

Habitat Patch draft cont

Submitted by aprisby on Thu, 03/21/2019 - 20:24

We have chosen habitats 11 and 12 because their populations are below 50 and steadily decreasing; it is essential that we protect these areas so that the two populations do not go extinct. Similarly, habitats 13 and 14 hold decreasing  populations. As a result. we must conserve corridors W, U, V, and T. Since U and V connect 11 and 12 to 13 and 14 , W connects these populations to habitats 15, 16, and 17, all holding stable populations. We will conserve these steady populations because it is important that the depleted and decreasing populations have access to healthy ones in order to increase genetic variability. We have also chosen to protect habitat 20 because although it is further from our other chosen areas, the location itself holds minimal data on jaguar population status. This area is critical for further research to determine if it is in danger or not. Likewise to corridor W, we will protect corridor T because this connects the decreasing populations to habitat 2 which is a large, stable population. It will be preserved like habitats 15, 16, and 17 to increase the jaguar population gene pool which allows for better adaptation and survival rates. Next to habitat 2, we will also conserve corridor A connecting to habitat 1 because although habitat 1 is currently stable, if this population were to become cut off from habitat 2 it would fall at risk to inbred populations. Additionally because it is located further north, this will allow for further jaguar migration and dispersal to different areas in the north. Next to habitat 2, we will protect habitats 3 and 4 due to decreasing population and by connecting them we hope to stabilize habitat 2 with more migration. Along these lines, corridor E will be conserved so that it may bridge together habitats 3 and 4 with 6, 7, and 8 to allow for dispersal of varied populations. Habitats 6 and 7 both contain populations that are below 50 animals and steadily decreasing, so conserving and connecting these to neighboring populations should preserve these populations from total extinction and allow them to grow. Finally, we will protect habitat 8 because it is the only piece of land connected to the decreasing populations in habitats 6 and 7, therefore allowing these populations to intermingle. This  will help them to maintain a diverse gene pool and increase overall population size.

 

Reduction of Benzoin

Submitted by lgarneau on Thu, 03/21/2019 - 20:23

In a 25 mL Erlenmeyer flask benzoin (0.503 g) and ethanol (4.0 mL) was added and swirled until dissolved. Sodium borohydride (0.1 g) was added with a microspatula over five minutes. Mixture was gently swirled for 20 minutes. Mixture was cooled in ice-water bath. Water (5.0 mL) and 6 M HCl (0.3 mL) was added. Water (2.5 mL) was added 15 minutes later. Product was collected via vacuum filtration. Solid was washed with ice-cold water and dried on filter for 15 min. Crude yield and MP determined. Crude material (1.5 mg) was reserved for TLC. Crude solid was recrystallized from acetone with 25 mL Erlenmeyer flask. Melting point and percent yield was determined. Benzoin, recrystallized product, and crude product was dissolved in ethyl acetate in three vials. TLC plates was spotted and run in 9:1 CH2Cl2:ethanol in capped chamber until 1 cm from top. Spots viewed under UV light and marked.

Simutext Results

Submitted by rdigregorio on Thu, 03/21/2019 - 20:03

After modeling two reserves after the example C, I wanted to increase the heterozygosity, while increasing the number of runs without a lost of alleles. The best way to do that was to increase the size of the individual populations. I went from four to three habitats to achieve this and was successful in my goal. As you can see in the table above, the heterozygosity went up from 0.18 to 0.23, and there was one run more than the Reserve C that did not lose an allele. Out of 20 runs, this is very impressive. This makes Reserve 1 the “best” fit reserve for the population of ferrets and will promote the success of more and more generations. In comparison to reserves A and B, Reserve 1 is much more successful. It is clear that the best reserve uses parts of each example to achieve a better grouping of habitats. In Reserve A, the size of the population was a successful way to promote the movement of genes through a population, however it reached fixation many times. In Reserve B, the generation of ferrets was represented in 4 separate habitats. This was not very successful as the habitats heterozygosity was minimized and fixation was reached very fast with such small populations. However, the idea to promote different alleles by separating the generation gave inspiration for genetic drift in Reserve C. As explained before, this reserve gave inspiration to both custom reserves, but itself was not successful enough because the distribution of populations was still too small. To avoid sampling error from small populations, and to still achieve the flow of diversity throughout the populations, Reserve 1 was the best model to save the ferrets with successful genetic drift.

 

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